PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017597-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 79aa    MW: 9131.12 Da    PI: 5.1871
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017597-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.4e-111558344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        +WT+eE +++ +a + + ++   +W ++ar +g g++ +++k  +
  WALNUT_00017597-RA 15 SWTPEENKRFERALAVYDKDtpdRWQKVARAVG-GKSVEEVKRQY 58
                        7********************************.********877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.531166IPR017884SANT domain
SMARTSM007171.2E-91264IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-61259IPR009057Homeodomain-like
SuperFamilySSF466896.06E-141469IPR009057Homeodomain-like
PfamPF002496.7E-91558IPR001005SANT/Myb domain
CDDcd001673.27E-71658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MASNSLASSR TSSSSWTPEE NKRFERALAV YDKDTPDRWQ KVARAVGGKS VEEVKRQYEI  60
LIEDVRDIES DRVPIPEYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-30679174RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241690.11e-40PREDICTED: protein RADIALIS-like 4
SwissprotQ1A1734e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLB9MXN32e-39B9MXN3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12390.15e-39(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.14e-32RAD-like 6